Plant MITE

SE3020770

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_907
Malus domestica
SE3020770
Mutator
MadM15
MDC029186.21:1225-1441
TTCTTTTAA
AAGGATCAAGATCCTTTCCTAACCCTTAAAAACTGAGCATGCTGAG

Secondary structure and sequence

TSD TIR

5'

3'

TTCTTTT        A    C    CTA                 A       CAAA   T                    C          AAAC     GGCCCTCTA
       AAGGATCA GATC TTTC   ACCCTTAAAAACTGAGC TGCTGAG    CAA CGTGGCTGTTGAAATTTGAT TAACGGCTAT    AGGGG         
       |||||||| |||| ||||   ||||||||||||||||| |||||||    ||| |||||||||||||||||||| ||||||||||    |||||         A
       TTCCTAGT CTAG AGAG   TGGGAATTTTTGACTCG ACGATTC    GTT GCACTGGCAACTTTAAACTA GTTGCTGATG    TCAAT         
AATTTTC        A    T    AAC                 G       ATCC   C                    A          ----     AATATTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020770

TTCTTTTAAGGATCAAGATCCTTTCCTAACCCTTAAAAACTGAGCATGCTGAGCAAACAATCGTGGCTGTTGAAATTTGATCTAACGGCTATAAACAGGGGGGCCCTCTAAAAGTTATAATAACTGTAGTCGTTGAATCAAATTTCAACGGTCACGCTTGCCTACTTAGCAGGCTCAGTTTTTAAGGGTCAAGAGATGATCATGATCCTTCTTTTAA

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