Plant MITE

SE3020772

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_909
Malus domestica
SE3020772
Mutator
MadM27
MDC018592.191:13948-14161
GATGACAAG
TGACAAGGGATCAGGATCCTCCCTTCACCCTTAAAAACTGAACATGCTAAGTAAGCAATTGTGGCCGTTGAAATTTGATTCAACGACTACAA

Secondary structure and sequence

TSD TIR

5'

3'

GA  A  AG           C  C  TC               A A    A    A           C                   A      -CAGGAG   CATC
  TG CA  GGATCAGGATC TC CT  ACCCTTAAAAACTGA C TGCT AGTA GCAATTGTGGC GTTGAAATTTGATTCAACG CTACAA       GAT    
  || ||  ||||||||||| || ||  ||||||||||||||| | |||| |||| ||||||||||| ||||||||||||||||||| ||||||       |||     
  AC GT  CCTAGTCCTAG AG GA  TGGGAATTTTTGACT G ACGA TCGT CGTTAGCACTG CAACTTTAAACTAAGTTGC GATGTT       TTG    
GA  A  AG           A  A  -T               C G    C    C           C                   C      AATAATA   AAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020772

GATGACAAGGGATCAGGATCCTCCCTTCACCCTTAAAAACTGAACATGCTAAGTAAGCAATTGTGGCCGTTGAAATTTGATTCAACGACTACAACAGGAGGATCATCTAAAGTTATAATAATTGTAGCCGTTGAATCAAATTTCAACCGTCACGATTGCCTGCTCAGCAGGCTCAGTTTTTAAGGGTTAGAGAAGATCCTGATCCGATGACAAG

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