SE3020775

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_912
  • Malus domestica
  • SE3020775
  • Mutator
  • MadM11
  • MDC019312.167:11299-11460
  • TACTGATAG
  • TGATAGGTTAGTGCTATTCACACACCCGTATACTTCCCACACACCCTTGTTGATTTTTGGCCATTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
  TAC    A   T         CA         --A      C        C  G             A   -   TTCTTCA
     TGAT GGT AGTGCTATT  CACACCCGT   TACTTC CACACACC TT TTGATTTTTGGCC TTG ATC       
     |||| ||| |||||||||  |||||||||   |||||| |||||||| || ||||||||||||| ||| |||       A
     ATTG CCA TCACGATAG  GTGTGGGTA   ATGAAG GTGTGTGG GA AGTTAAAAGTCGG AGC TAG       
TAGTC    -   -         AA         AAA      A        A  G             C   C   CTTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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