Plant MITE

SE3020776

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_913
Malus domestica
SE3020776
Mutator
MadM43
MDC009458.215:2901-3136
CTAACCTGG
TGGGGACAAGGATTGTCTGCTCTTCTTGTTCCCGTGCCCTCCCATGCYCTTCTGTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATT

Secondary structure and sequence

TSD TIR

5'

3'

CTAACC                       TCT      C            G Y         -                    C                ACTATTC        CTTATT
      TGGGGACAAGGATTGTCTGCTCT   TGTTCC GTGCCCTCCCAT C CTTCTGTTT GTGTGGTCACGGTTAAGCCA GTCAACATTTTATATT       ATTTTTGT      
      |||||||||||||||||||||||   |||||| |||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||       ||||||||       
      ATCCCTGTTCCTAACAGACGGGA   ACAAGG CACGGGAGGGTA G GAGGACAAA CACACCAGTGCCAATTTGGT CAGTTGTGAAATATAA       TAAAAATA      
GGTCCA                       ---      A            A G         A                    A                ----CAA        TCTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020776

CTAACCTGGGGACAAGGATTGTCTGCTCTTCTTGTTCCCGTGCCCTCCCATGCYCTTCTGTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTACTATTCATTTTTGTCTTATTATCTCTATAAAAATAACAATATAAAGTGTTGACATGGTTTAACCGTGACCACACAAAACAGGAGGGAATGGGAGGGCACAGGAACAAGGGCAGACAATCCTTGTCCCTAACCTGG

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