SE3020777

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_914
  • Malus domestica
  • SE3020777
  • Mutator
  • MadM11
  • MDC016416.57:5180-5341
  • AGAGTAAGG
  • AGGGGTGTGATATCCATACACCCATTTTTACTTCTCCCACACCTTTTTAGTTTTCGGCCGTCGGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
AGAGTA         A             A            C          --       C G    CG    GGATGAA
      AGGGGTGTG TATCCATACACCC TTTTTACTTCTC CACACCTTTT  TAGTTTT G CCGT  GATC       
      ||||||||| ||||||||||||| |||||||||||| ||||||||||  ||||||| | ||||  ||||       T
      TCCCTACAC ATAGGTGTGTGGG AAAAATGAAGAG GTGTGGGGAA  ATTAAAG C GGCA  CTAG       
ATGAGA         G             G            T          CA       A A    -A    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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