Plant MITE

SE3020778

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_915
Malus domestica
SE3020778
Mutator
MadM66
MDC006342.275:7860-8048
TTACAAAAT
GGGTAATGTTAGAGAGATTAATTTTTTTAAACCWAATTTGCAAACCAAATGATGTG

Secondary structure and sequence

TSD TIR

5'

3'

TTACAAAAT            A    T   T   TT    C W          C             TGAAGATGATTGGATTATTAACTAAGTA
         GGGTAATGTTAG GAGA TAA TTT  TAAA C AATTTGCAAA CAAATGATGTGGT                            
         |||||||||||| |||| ||| |||  |||| | |||||||||| |||||||||||||                             
         CCTATTACGATC CTCT ATT AAA  ATTT G TTAAACGTTT GTTTACTATACAG                            
TAAAACATT            C    C   T   -T    A T          A             TAGTTATTCTTTATTCGTGTAATTAGCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020778

TTACAAAATGGGTAATGTTAGAGAGATTAATTTTTTTAAACCWAATTTGCAAACCAAATGATGTGGTTGAAGATGATTGGATTATTAACTAAGTATCGATTAATGTGCTTATTTCTTATTGATGACATATCATTTGATTTGCAAATTTGATTTATAAATTTACTCTCCCTAGCATTATCCTTACAAAAT

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