SE3050782

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_919
  • Malus domestica
  • SE3050782
  • PIF/harbinger
  • MadP6
  • MDC001812.244:4495-4755
  • TAA
  • AGGTACCGTTTGGTACGCAGACGGGACG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -CA         GAACAGGACGGA      AA     A    GAAAAA    AGGAGAGATTTTGTCATAAAATGTTATAAATTTGTGTTCCACGAATGTGGAACGGGTCGTTCCAGGGGGA
  AGGTACCGTTTGGTACG   GACGGGACG            ACAGAT  TGTAA TATT      GATA                                                                      
  |||||||||||||||||   |||||||||            ||||||  ||||| ||||      ||||                                                                       
  TCCATGGCAAACCATGC   CTGCCCTGC            CGGCAA  GGCAG GGTG      CAAA                                                                      
AA                 ACC         -----------A      --     -    ------    CCATGCGAATTTTTGACACCTTGCCCAAYAGAGTACCCTGCTTTAAATCGACTAAAAAGCAAGGTGGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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