SE3020790

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_927
  • Malus domestica
  • SE3020790
  • Mutator
  • MadM28
  • MDC020022.247:6180-6688
  • AAAAAAAAG
  • GGTTTAAATGTTAAAATGGTCCATGTGTTTTAGTCATTAGGTCAATTTAGTCCATATGTTTTCAATTTGGCCAATTTGGT

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAAAAG         G   A       CA      T    C  TA   C        -   TA       A      CC           TGTG  -     -  TATGATAAACTTATTTATAAAATTATGATTTATTTGATTTAAATTATTTAAAATGAAATAAAATTAAAAATTAAGAGAAAAATTATTCTCCTCTCAACTCTTTGATCTCCTCCCTAACATTACCTCCTCTATTGTCTATGTCACAACCTTA
         GGTTTAAAT TTA AATGGTC  TGTGTT TAGT AT  GGT AATTTAGT CCA  TGTTTTC ATTTGG  AATTTGGTCAT    TT TATAA AT                                                                                                                                                       
         ||||||||| ||| |||||||  |||||| |||| ||  ||| |||||||| |||  ||||||| ||||||  |||||||||||    || ||||| ||                                                                                                                                                        
         CCGAATTTA AGT TTACCAG  ACACAA ATCA TA  TCG TTAGATTA GGT  ACAAAAG TAAACC  TTAAATCAAGG    GG ACAGA AC                                                                                                                                                       
AAAAAAAAA         A   A       AG      T    T  TA   A        A   --       C      AA           ----  C     A  AATCGATTAATTCCTGTYAAGTAAGTTAGAGAAAATTTTTTAAGTATTATTATTAGTATACTCTTTATTAATGTAAAAGAGAAATGTTTTTTTACGTTTAGTTACTCTTTAATGTGTATATTTTTTATTTTGAACGTTAGATTTTTTACTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End