SE3020791

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_928
  • Malus domestica
  • SE3020791
  • Mutator
  • MadM123
  • MDC009738.162:820-1035
  • GATAAAAAC
  • CGGAAAGAGATTCTCTTCTGATCTCATTTACCAAGATCACCAGATTAAGTCATTCAGATTTTTGAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GATAAAAA        G   CTC    -G    CA      A  A   C          C   CA       -       CATTC     TCTACCTGTTTTGATTATTTA
        CGGAAAGA ATT   TTCT  ATCT  TTTACC AG TCA CAGATTAAGT ATT  GATTTTT GAATTTT     AACGG                     
        |||||||| |||   ||||  ||||  |||||| || ||| |||||||||| |||  ||||||| |||||||     |||||                     A
        GCCTTTCT TAA   AAGA  TAGA  AAGTGG TC GGT GTCTAGTTCA TAA  CTAAAAA CTTAAAG     GATTA                     
CAAAAATA        A   --A    AA    AA      C  C   A          C   AC       T       ---TC     ATGTTTTTTAATAATATCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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