SE3020793

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_930
  • Malus domestica
  • SE3020793
  • Mutator
  • MadM58
  • MDC012739.227:1162-1357
  • TGGGTTAAT
  • GTTAATAAGGAGTAGGATTTTCTCCCCGCTATCCCTTTCTATCCCCTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TGG      AA                ---C  GCT   C     ------           ------------C  ACACTTTTTTTTTAATCTTATTTTTTATATAAA
   GTTAAT  GGAGTAGGATTTTCTC    CC   ATC CTTTC      TATCCCCTTTT             TC                                 
   ||||||  ||||||||||||||||    ||   ||| |||||      |||||||||||             ||                                  
   TAATTG  CCTCATCCTAAGAGAG    GG   TAG GAGAG      GTAGGGGAGGA             GC                                 
 TA      -G                TAAA  -AT   A     TGTAAA           TAAATTTACCAAC  TAATGCAGTGCGGATGTAGAACAAAACTTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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