Plant MITE

SE3020795

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_932
Malus domestica
SE3020795
Mutator
MadM12
MDC040085.10:3412-3652
TTTAAAGTT
TTTAAAGTTGGAAAAGGATCCTCACCGGATCCTTTTCTTGGGAATCCTAGGGATCCCGTAATCGTGACTGTTCATCGTACATCGTATGATCAG

Secondary structure and sequence

TSD TIR

5'

3'

         GTT      G      CA            C     A             C  A               C         A       ---------------   TTATTTCAAAATTTAAA
   TTTAAA   GGAAAA GATCCT  CCGGATCCTTTT TTGGG ATCCTAGGGATCC GT ATCGTGACTGTTCAT GTACATCGT TGATCAG               GAA                 
   ||||||   |||||| ||||||  |||||||||||| ||||| ||||||||||||| || ||||||||||||||| ||||||||| |||||||               |||                  
   AAATTT   CCTTTT CTAGGA  GGTCTAGGAAAA GACCC TAGGATCCCTAGG CG TAGCACTGACAAGTA CATGTAGCA GCTAGTC               TAA                 
TTG      ---      A      AC            A     C             A  C               A         C       AAAAGCAATCCATGA   ATATAAATTAAAATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020795

TTTAAAGTTGGAAAAGGATCCTCACCGGATCCTTTTCTTGGGAATCCTAGGGATCCCGTAATCGTGACTGTTCATCGTACATCGTATGATCAGGAATTATTTCAAAATTTAAAATTTAAAATTAAATATAAATAGTACCTAACGAAAACTGATCGCACGATGTACAATGAACAGTCACGATCGCAGGATCCCTAGGATCCCCAGAAAAAGGATCTGGCAAGGATCATTTTCCTTTAAAGTT

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