SE3020797

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_934
  • Malus domestica
  • SE3020797
  • Mutator
  • MadM124
  • MDC005220.494:3095-3282
  • ATGATTAAT
  • TGATTAATGAGAAATGCTAAGGAGACTATCTAAAAGTAGAACTTTTCATGARCTCTCTATCATCTCATAGTTTCACGTTAATTCATGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
   A      A              G     -ATC       -   A     C   ARC   CTA  A      A    CAC  -    -TCA    CTA
    TGATTA TGAGAAATGCTAAG AGACT    TAAAAGT AGA CTTTT ATG   TCT   TC TCTCAT GTTT   GT TAAT    TGTA   
    |||||| |||||||||||||| |||||    ||||||| ||| ||||| |||   |||   || |||||| ||||   || ||||    ||||   A
    ATTAGT ACTCTTTACGATTC TTTGA    GTTTTCA TCT GAAAA TAC   AGA   AG GGAGTA CAAA   CG ATTA    ATAT   
TTTA      -              -     GARA       C   -     -   CTA   AAC  C      -    AAT  T    TAAA    TAY
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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