SE3030799

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_936
  • Malus domestica
  • SE3030799
  • hAT
  • Madh21
  • MDC000956.1084:5353-5789
  • CATATGGA
  • CATATGGACAGGGACGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
        G CAG              ATTTCTTCTAGTGGGGACAACCGAAAACAACTAAGAAAATCTTATTATAGTATGGTTATACATAATATGATATTAATGATGGTTTCAAATGATGATGTATCACAATTTTAGTGTTACAAAAATTTCAATATAGTAGTGGAAAGTAGCAAAGTGATGAGAAAAATATAAGTTCATGATAGGCGGGAGAGGGTTT
  CATATG A   GGACGGAGCTAGAA                                                                                                                                                                                                 
  |||||| |   ||||||||||||||                                                                                                                                                                                                 T
  GTATAC T   CCTGCCTCGGTTAC                                                                                                                                                                                                 
AG      G --A              TTCCGAGTGACCCCCGTCTACGGGGGTTAGTTCATCAAGTAAACAAATCAACGTCTGATGTTAATATATTATATGTGCCCAATAGAAGCTTCTTTTATATACATAGATTATAGGTTGTATGTAAGTAAGTTGAATATGAAGTATAGTTTATAATATATTCGTTTTCACGAGAACAAGACAGAAAGTTTGACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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