SE3020801

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_938
  • Malus domestica
  • SE3020801
  • Mutator
  • MadM48
  • MDC011503.298:5604-5820
  • AAAATATAA
  • GGAAGAGGATTCTCTCTTGAGCTCAAGATGGGGATCCTCCTGACCAGGAAATCAGGGCCGTTCAAATTTAATCCAACGATTGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAATATAA                         A                    GG     A                        A  G   TTATTATAACTTTT G    T
         GGAAGAGGATTCTCTCTTGAGCTCA GATGGGGATCCTCCTGACCA  AAATC GGGCCGTTCAAATTTAATCCAACG TT CAA              A AGGA 
         ||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||| || |||              | |||| C
         CCTTCTCCTAGGAGAGGACTCGAGT CTACCCCTAGGAGGACTGGT  TTTAG CCCGGTAAGTTTAAATTAGGTTGC GA GTT              T TCCT 
AATATAAAA                         C                    MR     A                        C  G   -------------- G    C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3