SE3020802

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_939
  • Malus domestica
  • SE3020802
  • Mutator
  • MadM74
  • MDC017514.205:34047-34462
  • ATCTTTTAA
  • GAACAATATTTGGCTACTCAAAGATGAGTATGAACTCCTACTCAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCTTTTAA            G   CTC           T   C       C      ATTCAT    AATTTATAGAACTTCATGTTTATAATCAGAAATGTTCATATTATAAATCACCATATAAAGATCGCATCTGCAAAAAATCAATTAAAACTAAGATTATTTAGTCATCAAACTATTTAAAAACAAATGAACGGTATTGGTAAAAGC
         GAACAATATTTG CTA   AAAGATGAGTA GAA TCCTACT AAAATT      TGTA                                                                                                                                                
         |||||||||||| |||   ||||||||||| ||| ||||||| ||||||      ||||                                                                                                                                                 
         CTTGTTATGAAC GAT   TTTCTACTCAT CTT AGGATGA TTTTAA      GAAT                                                                                                                                                
AATTTTCTA            A   -AA           C   -       A      ------    CACAAAATTAGCGATTCGAAACACGAATACTAGTTTTGGCAAGTATGATACTTACTGAAACATTTTTAGTAGAGACGTTTTTTATTTAATTTCGATTTCAGCAAATCAATTAGATAACATCGTTTATGTATCTGCCAAGTATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3