SE3020804

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_941
  • Malus domestica
  • SE3020804
  • Mutator
  • MadM46
  • MDC011174.487:16664-17047
  • TTTGGTTAG
  • AGGCTTTTTAGCCAAAATAGTCCATGAGATTTGCACAACTCCTCACTTTGGTTTCTGAGATTTGAAATCAATAGAAGTGGTCCTTGAGATTGTCCACCATCAATCATTTTGGTCATTCCGTGAAAACTTATGTTAAATAAGGAACAAAATAACAAAACTACCCTCAATTTAATAAACAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTGGTT            C     A    A           C         C                       A      G           A           C                         --   AT           AAC     A      C        --A    A    CA  AGGC
       AGGCTTTTTAGC AAAAT GTCC TGAGATTTGCA AACTCCTCA TTTGGTTTCTGAGATTTGAAATC ATAGAA TGGTCCTTGAG TTGTCCACCAT AATCATTTTGGTCATTCCGTGAAAA  CTT  GTTAAATAAGG   AAAAT ACAAAA TACCCTCA   TTTA TAAA  AT    
       |||||||||||| ||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||  |||  |||||||||||   ||||| |||||| ||||||||   |||| ||||  ||     
       TCCGAAAAATCG TTTTA CAGG ACTCTAAACGT TTGAGGAGT AAACCAGGGACTCTAAACTTTAG TATCTT ACCAGGGACTT AACAGGTGGTA TTAGTAAAACCAGTAAGGCACTTTT  GAG  TAATTTATTTC   TTTTA TGTTTT ATGGGAGT   AGAT GTTT  TA    
TTGGTTT            A     C    G           A         T                       A      A           A           T                         TA   -G           -GA     A      T        AAA    A    AG  AAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End