Plant MITE

SE3020805

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_942
Malus domestica
SE3020805
Mutator
MadM15
MDC013237.130:10044-10252
AAATTATTG
AATTATTGGGAAAGGGATCCTCCCTTCCTCCTAATCCACCAAGTCTCRGAATCCGGACCGTTGAAATTTGATCAAACGGCTA

Secondary structure and sequence

TSD TIR

5'

3'

A   T   G            --------      CC          CC    C  -RGA   -   A                A        CAAACATAGGTCTACTTTAA      T
 AAT ATT GGAAAGGGATCC        TCCCTT  TCCTAATCCA  AAGT TC    ATC CGG CCGTTGAAATTTGATC AACGGCTA                    AAGTTA 
 ||| ||| ||||||||||||        ||||||  ||||||||||  |||| ||    ||| ||| |||||||||||||||| ||||||||                    |||||| A
 TTA TAA CCTTTCCCTAGG        AGGGAA  AGGATTAGGT  TTCA AG    TAG GCC GGCAATTTTAAACTAG TTGTTGAT                    TTCAAT 
G   T   A            AGAAGCCT      AT          AA    -  CCCC   A   -                G        --------------------      A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020805

AAATTATTGGGAAAGGGATCCTCCCTTCCTCCTAATCCACCAAGTCTCRGAATCCGGACCGTTGAAATTTGATCAAACGGCTACAAACATAGGTCTACTTTAAAAGTTATAATAACTTTAGTTGTTGGATCAAATTTTAACGGCCGAGATCCCCGAACTTAATGGATTAGGATAAAGGGATCCGAAGAGGATCCCTTTCCAAATTATTG

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