Plant MITE

SE3020806

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_943
Malus domestica
SE3020806
Mutator
MadM125
MDC020048.58:29947-30140
TCTAAATTT
AAATTTGAGATCAAATCTTCTGCATCTAAAATGGGTGTTGCCTCTTTGTTGCTTTAATCATTATTTGACACATTTAAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

TCT      -     --                           T          T -  TTA      AT         ----------        ATGACAACA
   AAATTT GAGAT  CAAATCTTCTGCATCTAAAATGGGTGT GCCTCTTTGT G CT   ATCATT  TTGACACAT          TTAAGTTT         
   |||||| |||||  ||||||||||||||||||||||||||| |||||||||| | ||   ||||||  |||||||||          ||||||||          
   TTTAAA CTCTA  GTTTAGAAGACGTAGGTTTTATCCACA CGGAGAAATA T GA   TAGTAA  GGCTGTGTA          AATTTAAA         
         T     TG                           C          R M  ---      CT         CTAATATTTG        AAAATCGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020806

TCTAAATTTGAGATCAAATCTTCTGCATCTAAAATGGGTGTTGCCTCTTTGTTGCTTTAATCATTATTTGACACATTTAAGTTTATGACAACAAAGCTAAAAAAATTTAAGTTTATAATCATGTGTCGGTCAATGATAGMTRATAAAGAGGCCACACCTATTTTGGATGCAGAAGATTTGGTATCTCTAAATTT

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