Plant MITE

SE3020807

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_944
Malus domestica
SE3020807
Mutator
MadM126
MDC012460.190:27156-27373
CTTGAAATG
GGGATCAGGATCCTCTCCTGAGCAAATTGAGAGGATCCTCCTGACCGGGTCCATCGGGCCGTTCAAATTCATCCAACGGCTACAA

Secondary structure and sequence

TSD TIR

5'

3'

CTTGAAAT  -             --            T                C              C       -TTC               TTATTATAATTTT   T  AC
        GG GATCAGGATCCTC  TCCTGAGCAAAT GAGAGGATCCTCCTGA CGGGTCCATCGGGC GTTCAAA    ATCCAACGGCTACAA             TAG GG  
        || |||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||| |||||||    |||||||||||||||             ||| ||   
        TC CTAGTCCTAGGAG  AGGACTCGTTTA CTCTCCTAGGAGGACT GTCCAGGTAGCCTG CAAGTTT    TAGGTTGCCGATGTT             ATC CC  
 GTAAAGT  S             AG            C                A              A       TAAA               ------------T   -  CC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020807

CTTGAAATGGGATCAGGATCCTCTCCTGAGCAAATTGAGAGGATCCTCCTGACCGGGTCCATCGGGCCGTTCAAATTCATCCAACGGCTACAATTATTATAATTTTTAGTGGACCCCCCTATTTGTAGCCGTTGGATAAATTTTGAACAGTCCGATGGACCTGATCAGGAGGATCCTCTCCATTTGCTCAGGAGAGAGGATCCTGATCSCTTGAAATG

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