Plant MITE

SE3020809

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_946
Malus domestica
SE3020809
Mutator
MadM10
MDC017109.175:6214-6452
ATTTCATAG
GGAGGCAAATTGTCTGCCCTCCTGTTTGGGTGYCYTTCCCATCCCCTCCTATTTTGTGCGGTCATGGTTAAGCCACGTCAACATTTTATATTAATTTTTTTAT

Secondary structure and sequence

TSD TIR

5'

3'

ATTTCATAG     CAA                        Y Y         C  C      T                  C    C  C          ------------AA    T    AG
         GGAGG   ATTGTCTGCCCTCCTGTTTGGGTG C TTCCCATCC CT CTATTT GTGCGGTCATGGTTAAGC ACGT AA ATTTTATATT              TTTT TTAT  
         |||||   |||||||||||||||||||||||| | ||||||||| || |||||| |||||||||||||||||| |||| || ||||||||||              |||| ||||   
         CCTCC   TAACAGATGGGAGGACAAACCCAC G AAGGGTAGG GA GATAAA CACGCCAGTGCCAATTCG TGCA TT TAAAATATAA              AGAA AATA  
GATACTTTA     ATC                        G G         A  A      -                  A    A  A          GAATCACRAAAAAC    T    GA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020809

ATTTCATAGGGAGGCAAATTGTCTGCCCTCCTGTTTGGGTGYCYTTCCCATCCCCTCCTATTTTGTGCGGTCATGGTTAAGCCACGTCAACATTTTATATTAATTTTTTTATAGAGATAATAAGACAAAAARCACTAAGAATATAAAATATTAACGTAGCTTAACCGTGACCGCACAAATAGAAGAGGATGGGAAGGGCACCCAAACAGGAGGGTAGACAATCTACCTCCATTTCATAG

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