Plant MITE

SE3050810

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_947
Malus domestica
SE3050810
PIF/harbinger
MadP9
MDC004410.707:30375-30728
TTA
AGGGCTGGTTTGGTATTGATGTGCTTTGAAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT   G               T   -C          AAA      --------C    -GT     A -   GAGAATAAACAGCTGTGAAATAAAGCAGCAGAGTGTTTGGTAAACTTTTTTGTAAAAGTGCTTTTGAAAAAAAAAGCAGTATTATAGTGCTTGGTAAACTTTTATGTAAA
  AGG CTGGTTTGGTATTGA GTG  TTTGAAAAAA   CTGCTT         TGTT   GCTGT T TGT                                                                                                              
  ||| ||||||||||||||| |||  ||||||||||   ||||||         ||||   ||||| | |||                                                                                                              A
  TCC GACCAAACCATGACT CAC  AGACTTTTTT   CTCATA         GACC   GAAAA A CAC                                                                                                              
AT   G               C   TA          -CA      KTTTTTTTY    CTC     - A   AAACCATTTGTAAGTCGAAGTCAAAAAAAAAGTGTCAAAACCCACTTTTTTTCGTTTTTTGTGTTTCAACGTTTTGGGTCTAAACTTTTTGGCCGAAAAAAAGTGTAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050810

TTAGGGCTGGTTTGGTATTGATGTGCTTTGAAAAAAAAACTGCTTCTGTTGTGCTGTATTGTGAGAATAAACAGCTGTGAAATAAAGCAGCAGAGTGTTTGGTAAACTTTTTTGTAAAAGTGCTTTTGAAAAAAAAAGCAGTATTATAGTGCTTGGTAAACTTTTATGTAAAACAAATGTGAAAAAAAGCCGGTTTTTCAAATCTGGGTTTTGCAACTTTGTGTTTTTTGCTTTTTTTCACCCAAAACTGTGAAAAAAAAACTGAAGCTGAATGTTTACCAAACACAAAAAAGCTCCCAGYTTTTTTTKATACTCACTTTTTTCAGAATCACCTCAGTACCAAACCAGGCCTTA

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