SE3020814

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_951
  • Malus domestica
  • SE3020814
  • Mutator
  • MadM20
  • MDC022708.152:19301-19517
  • GTCCCCGAT
  • GTCCCCGATGGATTTGGATCCTCTCCTGAGCCCAAGGAGAGGATCCTCCTGACCAAGAACAGTCGGCCGTTGGATTTTCATCCAATGGCTATAA

Secondary structure and sequence

TSD    TIR
5'



3' 
   CCC                   C    C                          A  A  C              C               TTATTATAACATTAAA    C
GTC   GATGGATTTGGATCCTCTC TGAG CCAAGGAGAGGATCCTCCTGACCAAG AC GT GGCCGTTGGATTTT ATCCAATGGCTATAA                GGGA 
|||   ||||||||||||||||||| |||| |||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||                |||| C
TAG   CTGCCTAAACCTAGGAGAG ACTC GGTTTCTCTCCTAGGGGGACTGGTTC TG CA CCGGCAACCTAAAA TAGGTTGCTGATGTT                TCCT 
   CCC                   A    C                          C  A  C              A               --------------TG    C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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