SE3020815

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_952
  • Malus domestica
  • SE3020815
  • Mutator
  • MadM11
  • MDC006391.297:25855-26017
  • TTTAAATAG
  • TTTAAATAGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACCCTTGTTAATTTATGTTTGTTGATC

Secondary structure and sequence

TSD    TIR
5'



3' 
       AT         C   C  C   C CC            A  CAC    G   A   A  T      -   TTCTTTA
  TTTAA  AGGGGTGTG TAT CA ACA C  TTTTTACTTCTC CA   CCTT TTA TTT TG TTGTTG ATC       
  |||||  ||||||||| ||| || ||| |  |||||||||||| ||   |||| ||| ||| || |||||| |||       A
  AAATT  TCCCCACAC ATA GT TGT G  AAAAATGAAGAG GT   GGAA AAT AAA GC GGCAGC TAG       
AT     --         T   A  A   A TA            A  -AT    A   C   A  C      C   CCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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