SE3020818

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_955
  • Malus domestica
  • SE3020818
  • Mutator
  • MadM11
  • MDC006833.357:5743-5906
  • TTAAATCAA
  • AAGGGATGTGATATCCACACCCCTTTTTACTTCTCTCACACCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAATC     A    A       --                      -     TKAAT    RG  RTCG    AGATGAA
       AAGGG TGTG TATCCAC  ACCCCTTTTTACTTCTCTCACA CCCTT     TTTC  TC    GATC       
       ||||| |||| |||||||  |||||||||||||||||||||| |||||     ||||  ||    ||||       T
       TTCCC ACAC ATAGGTG  TGGGGAAAAATGAAGAGGGTGT GGGAA     AAAG  AG    CTAG       
AACTAAA     C    G       TG                      A     CAATT    AY  KAAA    AAGAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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