SE3020819

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_956
  • Malus domestica
  • SE3020819
  • Mutator
  • MadM19
  • MDC017572.202:9781-9996
  • AGTGAAAAA
  • GGACCAGGATCCTCTTCTGAGCAGATGGAGAGGATCCTCCTGATCAGGTTTATCGGTCCGTTTATTTTTTATCCAACGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
AGTGAAAAA   C                  A               C                 T                         CAAA     GGTCCCTCT
         GGA CAGGATCCTCTTCTGAGC GATGGAGAGGATCCT CTGATCAGGTTTATCGG CCGTTTATTTTTTATCCAACGGTTA    TAGGG         
         ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    |||||         A
         CCT GTCCTAGGAGAGGACTCG CTACTTCTCCTAGGA GACTAGTTCGAGTAGCC GGCAAGTAAAAAATAGGTTGCCAAT    TTAAT         
AAAAAGTGA   A                  A               A                 C                         ---A     AATATTGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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