Plant MITE

SE3020822

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_959
Malus domestica
SE3020822
Mutator
MadM127
MDC006493.436:28688-28925
ATGTTTTGG
TGGAGAAATTTTTAGATGTTCCCGTCATCCCACATCACCATTACACTTGGTGTACCCATCCAATCAGGGGATGCCATGCTTCCCATTAAAG

Secondary structure and sequence

TSD TIR

5'

3'

ATGTTT               A                     C   -T                              G     C  C         TGTT     AA       TCTTA
      TGGAGAAATTTTTAG TGTTCCCGTCATCCCACATCA CAT  ACACTTGGTGTACCCATCCAATCAGGGGAT CCATG TT CCATTAAAG    TGTTT  TTGATTT     
      ||||||||||||||| ||||||||||||||||||||| |||  |||||||||||||||||||||||||||||| ||||| || |||||||||    |||||  |||||||     A
      ACCTCTTTAAAAATC ACAAGGGCAGTAGGGTGTAGT GTA  TGTGAACCATATGGGTAGGTTAGTCCCCTA GGTGC AA GGTAATTTC    ATAAA  GACTAAA     
TTTTGT               C                     A   CC                              A     A  A         --TT     --       TAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020822

ATGTTTTGGAGAAATTTTTAGATGTTCCCGTCATCCCACATCACCATTACACTTGGTGTACCCATCCAATCAGGGGATGCCATGCTTCCCATTAAAGTGTTTGTTTAATTGATTTTCTTAAAAAATAAATCAGAAATATTCTTTAATGGAAAACGTGGAATCCCCTGATTGGATGGGTATACCAAGTGTCCATGATGATGTGGGATGACGGGAACACCTAAAAATTTCTCCATGTTTT

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