SE3020826

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_963
  • Malus domestica
  • SE3020826
  • Mutator
  • MadM20
  • MDC003271.339:2353-2569
  • CGAAAGGTC
  • GA

Secondary structure and sequence

TSD    TIR
5'



3' 
C  AAGG    -    A                                     C       A   A                    A       TTATTATAACTTTA
 GA    TCGG ATTT GATCCTCTCCTGAGCTAATGGAGAGGATCCTCCTGAC AGTTATC TGG CCGTTGGATTTTTATCCAAC ACTATAA              
 ||    |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||              A
 CT    AGCC TAAA CTAGGAGAGGACTCGATTACCTCTCCTAGGAGGACTG TCAGTAG ACC GGCAACCTAAAAATAGGTTG TGATGTT              
   GGAA    C    C                                     A       C   C                    C       TGTCCCCCCAAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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