SE3020827

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_964
  • Malus domestica
  • SE3020827
  • Mutator
  • MadM54
  • MDC016712.235:11181-11393
  • CATTTATAT
  • GGAAAGGGATCATCTTCAGATCCCTTCCTCCTAATCCATCAAGTTCGGGGATCCGAGCTGTTGAAATTTGATYTAACGGCTAAAGTTATTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CATTTATAT           A     A                                                      Y    G    -   TTA    AACTT
         GGAAAGGGATC TCTTC GATCCCTTCCTCCTAATCCATCAAGTTCGGGGATCCGAGCTGTTGAAATTTGAT TAAC GCTA AAG   TTAT     
         ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||   ||||      
         CCTTTCCCTAG AGAGG CTAGGGAAGGAGGATTAGGTGGTTCAGGCCCCTAGGTTCGATAACTTTAAACTA GTTG CGAT TTC   GATG     
TATATTTAC           G     C                                                      A    Y    G   CCG    AAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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