SE3020831

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_968
  • Malus domestica
  • SE3020831
  • Mutator
  • MadM43
  • MDC024342.31:5590-5827
  • AAATATAAA
  • GGACAAGGATTGTATGCCCTCCCACTTCCGGTGCCCWTCCATGCCCTCCTATTTGTGTGGTCACGYTTAAGCCACGTRAACATTTTATATT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATATAAA                  C        C        W   A         -A              Y        C  R             -ACTA     TTTTYTCTT
         GGACAAGGATTGTATGCC TCCCACTT CGGTGCCC TCC TGCCCTCCT  TTTGTGTGGTCACG TTAAGCCA GT AACATTTTATATT     TTTAT         
         |||||||||||||||||| |||||||| |||||||| ||| |||||||||  |||||||||||||| |||||||| || |||||||||||||     |||||          
         CCTGTTCCTAACATACGG AGGGTGAA GCCACGGG AGG ACGGGAGGA  AAACACACCAGTGC AATTCGGT CA TTGTAAAATATAA     AAATA         
AAATATAAA                  A        A        A   C         CA              C        Y  G             CAAAA     TKTCTATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3