SE3020832

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_969
  • Malus domestica
  • SE3020832
  • Mutator
  • MadM34
  • MDC016170.131:2125-2341
  • ATTATAAAG
  • TTATAAAGGGAAAGAGATTTTTTTCCAGATCTCTTCTACCAAGGCCACTAGATCAAGTGATCTGGGCATTTGAAATTTCATCAAACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
 A      AG          TT    C A                 C  CTA        G        A              A     --CCCAAC    T    CCCT
  TTATAA  GGAAAGAGAT  TTTT C GATCTCTTCTACCAAGG CA   GATCAAGT ATCTGGGC TTTGAAATTTCATC AACGG        TGTT TGAT    
  ||||||  ||||||||||  |||| | ||||||||||||||||| ||   |||||||| |||||||| |||||||||||||| |||||        |||| ||||    T
  AATATT  CCTTTCTCTA  GAGA G CTAGAGAAGGTGGTTCC GT   CTAGTTCA TAGGCTCG AAATTTTAAAGTAG TTGCC        ATAA ATTG    
GA      -A          -T    R C                 A  RAC        G        -              G     ATTTTTTA    T    AAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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