Plant MITE

SE3020833

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_970
Malus domestica
SE3020833
Mutator
MadM11
MDC017207.68:198-359
TAAAAAAGG
AAGGGGTGTGATATCCACACACCCCATTTTACTTCTCACACACCTTTTAAATTTTCGGCTGTCGGATC

Secondary structure and sequence

TSD TIR

5'

3'

       TAAAA          A             C                         -AT    G -    CG    GGATGAA
            AAGGGGTGTG TATCCACACACCC ATTTTACTTCTCACACACCTTTTAA   TTTC G CTGT  GATC       
            |||||||||| ||||||||||||| |||||||||||||||||||||||||   |||| | ||||  ||||       T
            TTCCCCACAC ATAGGTGTGTGGG TAAAATGAAGAGTGTGTGGGGAATT   AAAG C GGCA  CTAG       
TAAAAACAAAAA          G             T                         ATT    A A    -A    AAGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020833

TAAAAAAGGGGTGTGATATCCACACACCCCATTTTACTTCTCACACACCTTTTAAATTTTCGGCTGTCGGATCGGATGAATTGAAGAAGATCAACGGACAGAAATTATTAAGGGGTGTGTGAGAAGTAAAATTGGGTGTGTGGATAGCACACCCCTTAAAAACAAAAAT

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