SE3020834

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_971
  • Malus domestica
  • SE3020834
  • Mutator
  • MadM53
  • MDC002200.219:3450-3664
  • CTCTATAAA
  • GGACCAGGATCCTCTCCTGAGCTAAGGATGAGGATCCTCCTCATCAATTGGTGTGGGCCGTTGGATGAAAATCCAACGGCTACAAACAAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCTATAAA                             G                 TT  TG                                ------------AC    GG
         GGACCAGGATCCTCTCCTGAGCTAAGGAT AGGATCCTCCTCATCAA  GG  TGGGCCGTTGGATGAAAATCCAACGGCTACAA              AAGG  
         ||||||||||||||||||||||||||||| |||||||||||||||||  ||  ||||||||||||||||||||||||||||||||              ||||   
         CCTGGTCCTAGGAGAGGACTCGATTCCTA TCCTAGGAGGAGTAGTT  CC  ACCCGGCAACCTACTTTTAGGTTGCTGATGTT              TTCC  
AAATATCTC                             G                 -C  TA                                AATAATATTGAAAT    CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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