Plant MITE

SE3020836

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_973
Malus domestica
SE3020836
Mutator
MadM43
MDC011772.425:38453-38660
ATTAATAAT
ATTAATAATGGACAAGGATTGTCTGCCCTCCCACTTCCGGTGTCCTCCTATTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATT

Secondary structure and sequence

TSD TIR

5'

3'

    A         A       C  C                       AT                    C   G               TTTTTTWAAAMAT
ATTA TAATGGACA GGATTGT TG CCTCCCACTTCCGGTGTCCTCCT  TTTGTGTGGTCACGGTTAAG CAC TCAACATTTTATATT             
|||| ||||||||| ||||||| || |||||||||||||||||||||||  |||||||||||||||||||| ||| |||||||||||||||             A
TAAT ATTACCTGT CCTAACA AC GGAGGGTGAAGGCCACGGGAGGA  AAACACACCAGTGCCAATTC GTG AGTTGTAAAATATAA             
    A         C       T  A                       -C                    A   G               TGATAAATTAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020836

ATTAATAATGGACAAGGATTGTCTGCCCTCCCACTTCCGGTGTCCTCCTATTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTTTTTTTWAAAMATAAAAATTAAATAGTAATATAAAATGTTGAGGTGACTTAACCGTGACCACACAAACAGGAGGGCACCGGAAGTGGGAGGACATACAATCCCTGTCCATTAATAAT

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