SE3020838

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_975
  • Malus domestica
  • SE3020838
  • Mutator
  • MadM46
  • MDC019489.146:4647-5032
  • TAATATTAT
  • TAATATTATGGCTTTTCAGCCAAAATGGTCCGTGAGATTTGGATAACTCCTTACTTTGATCCTTGAGATTTGAAATCGATAGAATTGGTCCTTGAGTTTGTCCACAATCAATCATTTTGGTC

Secondary structure and sequence

TSD    TIR
5'



3'
         T       C                        GA               A  C                      T           T        A                ATTCTA        CTCCATA       A  -A           A          TTT   C    C  TTTG
 TAATATTA GGCTTTT AGCCAAAATGGTCCGTGAGATTTG  TAACTCCTTACTTTG TC TTGAGATTTGAAATCGATAGAA TGGTCCTTGAG TTGTCCAC ATCAATCATTTTGGTC      TGAAAAAT       AAATAAG AT  AAATGACAAAA TACCCTCAAT   TGT AAAT AT    
 |||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||| || |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||      ||||||||       ||||||| ||  ||||||||||| ||||||||||   ||| |||| ||     
 ATTATAAT CCGAAAA TTGGTTTTACCAGGTACTCTAAAC  ATTGAGGAATGAAAC AG AACTCTAAACTTTAGTTATCTT ACCAGGGATTC AACAGGTG TAGTTAGTAAAACTAG      ACTTTTTA       TTTATTC TA  TTTACTGTTTT ATGGGAGTTA   ATA TTTG TA    
T        -       A                        GG               C  T                      C           T        G                GGAACC        -ATACAA       C  GC           A          --T   A    T  TCCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End