Plant MITE

SE3020839

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_976
Malus domestica
SE3020839
Mutator
MadM33
MDC008168.362:6141-6456
TTATTTCCA
AGAGTAATGTTATTCATACCATGTTTTTATACCACATTTATATACCA

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTCC              C   CC        A   CAC    A       CCTTA        C           AC          G  AAATTTGCAAAACTCGAGAAAATG    -  AAATACTCCTTGTATGCCACAATCATAATTTAA
        AGAGTAATGTTATT ATA  ATGTTTTT TAC   ATTT TATACCA     GGTGGCAT TGATGTGGACA  CACATTATTT AA                        AAGG AG                                 
        |||||||||||||| |||  |||||||| |||   |||| |||||||     |||||||| |||||||||||  |||||||||| ||                        |||| ||                                  
        TCTCATTACAATAA TAT  TACAAAAA ATG   TAAA GTATGGT     CCACCGTA ACTACACTTGT  GTGTAGTAAA TT                        AGTA TA                                 
ACCTTTAT              A   AA        C   TTA    A       ATAAG        A           CT          G  -AATTAGTCTAAAAATTTAAATCA    A  AATTATTTGATTATTAATTCTTTTTGATCAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020839

TTATTTCCAGAGTAATGTTATTCATACCATGTTTTTATACCACATTTATATACCACCTTAGGTGGCATCTGATGTGGACAACCACATTATTTGAAAAATTTGCAAAACTCGAGAAAATGAAGGAGAAATACTCCTTGTATGCCACAATCATAATTTAATTAACTAGTTTTTCTTAATTATTAGTTTATTAAATAATGAACTAAATTTAAAAATCTGATTAATTGAAATGATGTGTCTGTTCACATCAAATGCCACCGAATATGGTATGAAAATATTGTACAAAAACATAATATAAATAACATTACTCTTATTTCCA

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