SE3020845

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_982
  • Malus domestica
  • SE3020845
  • Mutator
  • MadM8
  • MDC015789.239:18391-18567
  • GCATGTAAA
  • GCATGTAAAGAGTAATGTTGGGAAGATTAAATTTTTTAAACCAAATGATGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
         AAA             A                  -------------C          --------------------  ACCAATAAGAAATAAGCA
   GCATGT   GAGTAATGTTGGG AGATTAAATTTTTTAAAC              AAATGATGTG                    TC                  
   ||||||   ||||||||||||| ||||||||||||||||||              ||||||||||                    ||                   
   TGTACG   CTCATTACAATCC TCTGGTTTAAAAAATTTG              TTTACTACAC                    AT                  
AAA      ---             C                  ATTTAAACGTTTGA          CAACATCTACTAACCTAATA  TAATTCACGGCTAATTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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