Plant MITE

SE3020851

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_988
Malus domestica
SE3020851
Mutator
MadM11
MDC011987.353:23490-23652
TATAAGTAG
GTAGGGGTGTGATATCCACCCACCCATTTTTACTTTTCACACACCCTTCTAATTT

Secondary structure and sequence

TSD TIR

5'

3'

TATAA           A       C     A                      --C      TCGG    CG    GGA GAA
     GTAGGGGTGTG TATCCAC CACCC TTTTTACTTTTCACACACCCTT   TAATTT    CCGT  GATT   T   
     ||||||||||| ||||||| ||||| ||||||||||||||||||||||   ||||||    ||||  ||||   |   T
     TATCCCCACAC ATAGGTG GTGGG AAAAATGAAGAGTGTGTGGGAA   ATTAAA    GGCA  CTAG   A   
 TGAA           G       T     G                      ACA      TATA    -A    AAG AGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020851

TATAAGTAGGGGTGTGATATCCACCCACCCATTTTTACTTTTCACACACCCTTCTAATTTTCGGCCGTCGGATTGGATGAATTGAAGAAGATCAACGGATATAAATTAACAAAGGGTGTGTGAGAAGTAAAAAGGGGTGTGTGGATAGCACACCCCTATAAGT

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