SE3020853

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_990
  • Malus domestica
  • SE3020853
  • Mutator
  • MadM4
  • MDC006653.445:13342-13528
  • TTTATTTAT
  • TATTTATGGGGAATGCTAGGGAGACTAAATTTGTAGACAAAATTTTGGAACTAAAGAACATGGAAGTTGATGATTGGT

Secondary structure and sequence

TSD    TIR
5'



3'
TT  TT  T    -        G              A A        ---------------  GA     ------AG      GAA       -ATT   TT
  TA  TA GGGG AATGCTAG GAGACTAAATTTGT G CAAAATTT               TG  ACTAA        AACATG   GTTGATG    GGT  
  ||  || |||| |||||||| |||||||||||||| | ||||||||               ||  |||||        ||||||   |||||||    |||  A
  AT  AT TCCC TTACGATC CTCTGATTTAAACA C GTTTTAAA               AC  TGATT        TTGTGC   TAATTGC    TCA  
 T  TT  T    A        G              A C        CATTTAATTTACTAC  AG     ATACTTAG      AAA       GAAT   TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End