Plant MITE

SE3020857

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_994
Malus domestica
SE3020857
Mutator
MadM12
MDC006447.348:6031-6261
AGCCCCAAT
TGAACCAGAATTCTCTCATGAGCATTTCCCTAGGGATCCCGCAATCTTGTCCGTTCATTTTATATYGTGCGGTCAGTTTTCGTTARGTACTATTCA

Secondary structure and sequence

TSD TIR

5'

3'

AGCCCCAA        A                    --------                 T            TTA   Y       C  TTT     -----------ARG  CT     TA
        TGAACCAG ATTCTCTCATGAGCATTTCC        CTAGGGATCCCGCAATC TGTCCGTTCATT   TAT GTGCGGT AG   TCGTT              TA  ATTCA  
        |||||||| ||||||||||||||||||||        ||||||||||||||||| ||||||||||||   ||| ||||||| ||   |||||              ||  |||||   
        ACTTGGTC TAAGAGAGTACTCGTAAGGG        GATCCCTAGGGCGTTAG ACAGGCAAGTAG   ATA CACGCCA TC   AGTAA              AT  TAAGT  
TAACCCCG        C                    ATCCCTAG                 T            CAC   G       R  TTT     ATTTWAAATTTAAA  TT     TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020857

AGCCCCAATGAACCAGAATTCTCTCATGAGCATTTCCCTAGGGATCCCGCAATCTTGTCCGTTCATTTTATATYGTGCGGTCAGTTTTCGTTARGTACTATTCATATTTGAATTTTAAAATTTAAAWTTTAAATGATTTCTRACCGCACGATACACGATGAACGGACATGATTGCGGGATCCCTAGGATCCCTAGGGAATGCTCATGAGAGAATCCTGGTTCAGCCCCAAT

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