Plant MITE

SE3050858

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_995
Malus domestica
SE3050858
PIF/harbinger
MadP6
MDC002781.274:2869-3145
TTA
AGGTACCGTTTGGTACGTGGGACGGAACAGGACGAGCCG

Secondary structure and sequence

TSD TIR

5'

3'

    TT                  ----                A C  TTCC  C   CGTTTGGTGCATCTAAAAACTATAGAACGGGTTGTCCCATAGGACGAAATTTGGCTGATTTTTCGTTCCACCTCTTCCCCTTGGAA
      AGGTACCGTTTGGTACGT    GGGACGGAACAGGACG G CG    GT CCA                                                                                      
      ||||||||||||||||||    |||||||||||||||| | ||    || |||                                                                                      C
      TCCATGGCAAACCATGCG    CCCTGCCTTGTCCTGC C GC    TG TCT                                                                                      
ACCAAT                  TCTG                C T  --CC  -   TGTCTACTACATTTATAACTTTTTCTATTCCTCTTTAAAACAGTATTTTACAATATTTAAACACAAGGTGCCTACACCTTGCCCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3050858

TTAGGTACCGTTTGGTACGTGGGACGGAACAGGACGAGCCGTTCCGTCCCACGTTTGGTGCATCTAAAAACTATAGAACGGGTTGTCCCATAGGACGAAATTTGGCTGATTTTTCGTTCCACCTCTTCCCCTTGGAACCACCCGTTCCACATCCGTGGAACACAAATTTATAACATTTTATGACAAAATTTCTCCTTATCTTTTTCAATATTTACATCATCTGTTCTGTCCCGTCCCGTCCTGTTCCGTCCCGTCTGCGTACCAAACGGTACCTTAACCA

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