Plant MITE

SE3020862

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_999
Malus domestica
SE3020862
Mutator
MadM11
MDC020787.78:25809-25972
TTTAATTAG
TAATTAGGGGTGTGATATCCACACACCCGTTTTTACTTCTCTCACACCTTTTTTATTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TT     --         A           CCG            T          -   T    GGCRGTCYGATCGGATGA     AGA
  TAATT  AGGGGTGTG TATCCACACAC   TTTTTACTTCTC CACACCTTTT TTA TTTC                  ATTGA   
  |||||  ||||||||| |||||||||||   |||||||||||| |||||||||| ||| ||||                  |||||    
  ATTAA  TCCCCACAC ATAGGTGTGTG   AAAAATGAAGAG GTGTGGGGAA AAT AAAG                  TAACT   
       TT         G           YAG            T          C   T    -------------ACAGG     AMA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020862

TTTAATTAGGGGTGTGATATCCACACACCCGTTTTTACTTCTCTCACACCTTTTTTATTTTCGGCRGTCYGATCGGATGAATTGAAGAAMATCAATGGACAGAAATTAACAAGGGGTGTGTGAGAAGTAAAAAGAYGTGTGTGGATAGCACACCCCTTTAATTA

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