SE3020863

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1000
  • Malus domestica
  • SE3020863
  • Mutator
  • MadM41
  • MDC008721.170:779-995
  • AAAGAAAAA
  • GGATTTGGATCCTCTCCTGAGCTAATGGAGGGGATCCTCCTGACCAAACATTTTGAACCTTTAGATTTTTATCGAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAGAAAAA          C    C                         G C        T  A   T  A          G   -     CAAACAGAATGGTCCCT
         GGATTTGGAT CTCT CTGAGCTAATGGAGGGGATCCTCCT A CAAACATT TG ACC TT GATTTTTATC AAC GACTA                 
         |||||||||| |||| ||||||||||||||||||||||||| | |||||||| || ||| || |||||||||| ||| |||||                  
         CCTAAACCTA GAGA GACTCGATTACCTCTCCTAGGAGGA T GTTTGTAA AC TGG AA CTAAAAGTAG TTG CAATA                 
AAAAAGAAA          A    A                         G A        C  C   T  C          G   C     TTAATAATATTGAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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