SE3020867

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1004
  • Malus domestica
  • SE3020867
  • Mutator
  • MadM32
  • MDC013409.164:7726-7916
  • TTTAGCTAT
  • TAGCTATGAGTAATGTTAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      -T             GAAATCA        ---          -           T     ------------------  ATCAATAAGAAATAAGCAC
  TAGCTA  GAGTAATGTTAGG       AATTTTTT   AAATCAAATT GCAAATTAAAT ATGTG                  TC                   
  ||||||  |||||||||||||       ||||||||   |||||||||| ||||||||||| |||||                  ||                    
  ATCGAT  CTCATTACGATCC       TTAAAAAA   TTTAGTTTAA CGTTTGATTTA TACAC                  TA                   
 T      TT             -AAATAA        AAW          A           C     CAACATCTACTAACCTAA  ATTAGTTAATAGCTAATTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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