SE3020868

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1005
  • Malus domestica
  • SE3020868
  • Mutator
  • MadM11
  • MDC009662.63:16856-17021
  • TTGTTGATA
  • TGTTGATAGGGGTGTGCTATCCACACARCKKTTTTTACTTCTRACACACCCTTTGTTAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -        C          R KK           R     C     GT      ATGT      ATCTTCTTCAA
 TGTTGATA GGGGTGTG TATCCACACA C  TTTTTACTTCT ACACA CCTTT  TAATTT    CCGTTG           
 |||||||| |||||||| |||||||||| |  ||||||||||| ||||| |||||  ||||||    ||||||            
 ATAGTTGT CCCCACAC ATAGGTGTGT G  AAAAATGAAGA TGTGT GGAAA  ATTAAA    GGCAGC           
         T        T          G GT           G     A     --      AAKC      CTAACCTACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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