SE3020872

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1009
  • Malus domestica
  • SE3020872
  • Mutator
  • MadM5
  • MDC014113.381:2522-2710
  • CTCACTAAG
  • AGGAGAGATTTTTCAYTGTGATCAGCACATMAAGTGGTACACCACYTGTTACTATACAAATAATGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCACTA             CAY      C  C   TMA             Y    AC   AC    AA  -   ----------TATATG      AA
       AGGAGAGATTTTT   TGTGAT AG ACA   AGTGGTACACCAC TGTT  TAT  AAAT  TG GAA                TGTTAA  
       |||||||||||||   |||||| || |||   ||||||||||||| ||||  |||  ||||  || |||                ||||||  A
       TCCTCTTTAAAAA   ACACTG TC TGT   TCACCATGTGGTG ACAA  ATA  TTTA  AC CTT                ACAATT  
GAATCAC             ATA      T  T   -TC             C    AA   CA    CC  T   TAAAATAAKAAATTCA      AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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