SE3020875

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1012
  • Malus domestica
  • SE3020875
  • Mutator
  • MadM41
  • MDC011646.426:3328-3542
  • GAGGTAAAG
  • GGAATTGGATCCTCTCCTGAGCACAAGGAGCAGATCCTCCTAACCAACACACATGGACCATTGGATTTTATCCAACAGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
 GAGGTAAAG           C                   A       CTA         CA   A  A        -        A    CAAACAAAGGGTC  GT
          GGAATTGGATC TCTCCTGAGCACAAGGAGC GATCCTC   ACCAACACA  TGG CC TTGGATTT TATCCAAC GCTA             CT  
          ||||||||||| ||||||||||||||||||| |||||||   |||||||||  ||| || |||||||| |||||||| ||||             ||   
          CCTTAACCTAG AGAGGACTCGTGTTCCTCG CTAGGAG   TGGTTGTGT  ACC GG AACCTAAA GTAGGTTG CGAT             GA  
TGAAATGGAG           T                   C       TAC         AC   C  C        A        C    -ACTAATAAGATT  AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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