Plant MITE

SE3020877

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1014
Malus domestica
SE3020877
Mutator
MadM12
MDC000130.277:7583-7822
CCTTCCAAG
GGGAAAAGGATCCTCGCCGGATCCTTTTCCTGGAGATTCCAGGAATCGTYTAAT

Secondary structure and sequence

TSD TIR

5'

3'

CCTTCCAA                    ATC     C    A     CA        Y    CATATRC   C  CY     ---A   CYATCATAAATTATTTTAAATTTAAAATTTAA
        GGGAAAAGGATCCTCGCCGG   CTTTT CTGG GATTC  GGAATCGT TAAT       GTT AT  TACAT    GTA                                
        ||||||||||||||||||||   ||||| |||| |||||  |||||||| ||||       ||| ||  |||||    |||                                A
        CCCTTTTCCTAGGAGCGGTC   GAAAA GACC CTAGG  CCTTAGCA ATTA       CAA TA  ATGTA    GCT                                
GAACCTTC                    WAA     A    A     YC        C    YTACATA   Y  YC     GCAC   AGTCAAAAGCAATCCATGATAAATATAAATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020877

CCTTCCAAGGGAAAAGGATCCTCGCCGGATCCTTTTCCTGGAGATTCCAGGAATCGTYTAATCATATRCGTTCATCYTACATAGTACYATCATAAATTATTTTAAATTTAAAATTTAAAATTAAATATAAATAGTACCTAACGAAAACTGATCGCACGATGTACYATYAACATACATYATTACACGATTCCCYGGATCACCAGAAAAAGAAWCTGGCGAGGATCCTTTTCCCCTTCCAAG

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