SE3020878

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1015
  • Malus domestica
  • SE3020878
  • Mutator
  • MadM131
  • MDC005371.224:8235-8445
  • ATTATCCCC
  • GGAAAGGGATCGGATTCATTTCCATCAAATCCACTAAATTCGGAATTCGCGTCTTTGAAATTTAATCCAACGATTACA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTATCCCC     G   ------        A    C       CC     A    GA     C   T   A     A        A     TTTATTATAATTTTT
         GGAAA GGA      TCGGATTC TTTC ATCAAAT  ACTAA TTCG  ATTCG GTC TTG AATTT ATCCAACG TTACA               
         ||||| |||      |||||||| |||| |||||||  ||||| ||||  ||||| ||| ||| ||||| |||||||| |||||               A
         CCTTT CCT      AGCCTAGG AAAG TGGTTTA  TGGTT AAGC  TAGGC TAG AAC TTAAA TAGGTTGC AATGT               
CCCCTATTA     A   AGGAGA        G    A       AA     C    AC     C   C   G     C        C     TTGTCCTCCAAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3