Plant MITE

SE3020879

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1016
Malus domestica
SE3020879
Mutator
MadM15
MDC001722.769:472-688
GGACCCGAC
GGACCCGACGGATCATGATCCTCTCTTGAGTTAAGGGTGAGGATTCTCTTGAGTAAGCTCATCGGGCTGTTGAAATTTTATTCAACGATTACAA

Secondary structure and sequence

TSD TIR

5'

3'

     AC  GAC      T                  G                      C   -                          A      TTATTATAA    T
   GG  CC   GGATCA GATCCTCTCTTGAGTTAA GGTGAGGATTCTCTTGAGTAAG TCA TCGGGCTGTTGAAATTTTATTCAACG TTACAA         CTTT 
   ||  ||   |||||| |||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||         |||| A
   CC  GG   CCTAGT CTAGGAGAGGACTTGATT CCACTCCTAGGAGGACTCGTTC AGT AGCCCGGCAACTTTAAAATAGGTTGC GATGTT         GAGA 
CAG  CA  ---      C                  A                      -   T                          C      TGTCCCATA    G

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020879

GGACCCGACGGATCATGATCCTCTCTTGAGTTAAGGGTGAGGATTCTCTTGAGTAAGCTCATCGGGCTGTTGAAATTTTATTCAACGATTACAATTATTATAACTTTTAGAGAGATACCCTGTTTGTAGCCGTTGGATAAAATTTCAACGGCCCGATTGACTTGCTCAGGAGGATCCTCACCATTAGTTCAGGAGAGGATCCTGATCCGGACCCGAC

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