Plant MITE

SE3020881

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1018
Malus domestica
SE3020881
Mutator
MadM64
MDC013201.101:7538-7753
GTGTGCAAC
TGTGCAACGGAATTGGATCCCCTCCTGAGCAAATGGTGGGGATCCTCATGACCAAATAACACAGACCGTTGAATTTTGATCTAACGGCTACAA

Secondary structure and sequence

TSD TIR

5'

3'

 G      A                         A                  C  A       A        A        C   C  C     ATAAGG  CT  CT
  TGTGCA CGGAATTGGATCCCCTCCTGAGCAA TGGTGGGGATCCTCATGA CA ATAACAC GACCGTTG ATTTTGAT TAA GG TACAA      AT  CT  
  |||||| ||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||||| |||||||| ||| || |||||      ||  ||  A
  ACGTGT GCCTTAACCTAGGGGAGGACTCGTT ACCACCCCTAGGAGTACT GT TGTTGTG CTGGCAAT TAAAACTA GTT CC ATGTT      TA  GA  
CA      -                         A                  A  G       C        C        A   A  A     -AATAA  TT  AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020881

GTGTGCAACGGAATTGGATCCCCTCCTGAGCAAATGGTGGGGATCCTCATGACCAAATAACACAGACCGTTGAATTTTGATCTAACGGCTACAAATAAGGATCTCTCTAAAAGTTATAATAATTGTAACCATTGAATCAAAATCTAACGGTCCGTGTTGTGTGATCATGAGGATCCCCACCAATTGCTCAGGAGGGGATCCAATTCCGTGTGCAAC

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